Pipeline Usage
- Edit the fields of the
pipeline.json
file to reflect your inputs and requirements. - Run
python -m main pipeline.json
JSON Input Documentation
To create a JSON pipeline that fits your needs, see the following tutorial
Output Files
- The commands executed during the workflow are captured in
{output_dir}/{run_name}-{timestamp}/commands.sh
. This is the shell script generated by the pipeline that is run to generate outputs. - The output files generated during the workflow are stored in the folder
{output_dir}/{run_name}-{timestamp}/
- The descriptive analysis files can be found in the folder
{output_dir}/{run_name}-{timestamp}/analysis
with the*.csv
file for each of the resolution values.